Bioinformatics Tutorials

Bioinformatics Tutorials & Articles are here.Tutorials classified laying foundation course for both science and computer students for those aspiring bioinformatics.List also includes Bioinformatics Tutorials & Articles related to various tools.
Foundation Tutorials for Bioinformatics Aspiriants Computer Tutorials for Science Stream Students

Introduction to computer Concepts
oac3.hsc.uth.tmc.edu
java.sun.com/docs/books/tutorial/
developer.java.sun.com/developer/onlineTraining/
javaboutique.internet.com/tutorials/
Perl for Biologists (Weizmann Institute)
Perl for Biologists
savage.net.au/Perl-tutorials.html
Welcome to the Bioperl Project !

XML Tutorials
wdvl.internet.com
php.weblogs.com/sql_tutorial
perl.about.com/cs/beginningsql/
http://www.db.cs.ucdavis.edu/teaching/sqltutorial/

C & C++ Tutorials
dmoz.org/Computers/Programming/Languages/C/Tutorials/

CGI Tutorials
webdesign.about.com/cs/cgi/
http://www.cgi101.com/class/

Visual Basic Tutorials
visualbasic.about.com/
visualbasic.ittoolbox.com/
members.tripod.com/~vkliew/vb.html
webreference.com/programming/unix/
scidiv.bcc.ctc.edu
library.thinkquest.org/12413/
biology-online.org/
Cartoon Guide to Genetics
genomebiology.com/tutorials/
Tutorials in Molecular Biology
BioBook Glossary
Highveld.com - Internet Directory of Biology and Biotechnology
ESG Biology Hypertextbook Home Page
DOE Primer on Molecular Genetics

Introduction to Chemistry
users.rcn.com/bobsalsa/tutorial.htm
lrc-srvr.chemistry.ohio-state.edu
Periodic table of the elements
Interactive periodic table of the elements

Introduction to Biochemistry
xray.bmc.uu.se/Courses/Bke1/Tutorials/ Tutorialindex.html
http://www.jonmaber.demon.co.uk/

About DNA
biog-101-104.bio.cornell.edu/BioG101_104/ tutorials/recomb_DNA.html
avery.rutgers.edu/WSSP/Tutorials/ (chime plugin required)
DNA tutorial
DNA from the beginning
Central Dogma Glossary

About RNA
zombie.imsb.au.dk/~raybrown/
ndbserver.rutgers.edu/NDB/structure-finder/ tutorials/full_ndb.dna.rna.res.html

About Genome
genomebiology.com/tutorials/
anatomy.med.unsw.edu.au/cbl/GENOME/tutorials.htm
rsat.ulb.ac.be/rsat/tutorials/ tut_genome-scale-patser.html
home.uchicago.edu/~ebetran/guides.html
Basic Genome Glossary
Limited Genome Glossary
Genome Glossary
The Gene-School Glossary
Glossary of Genetic Terms

Bioinformatics Tutorials

Introduction to Bioinformatics
Bioinformatics (Genomics)
Biocomputing in a Nutshell.
Biologist's Guide to Internet Resources
Computational Molecular Biology Course
Course on Bioinformatics
EMBNet Biocomputing Tutorials
Finding the genes in the genomic sequences
The Genetic Programming Tutorial
Jose R. Valverde's training course documents
Principles of Computational Biology, Steven Salzberg.
Principles of Protein Structure Using the Internet
Practical Course "Bioinformatics: Computer Methods in Molecular Biology"
Sequence analysis course (José R, Valverde, EMBNet/CNB)
Bioinformatics -An excellent review on genetic code and information processing
Molecular Sequence Analysis -Introductory sequence analysis by Andrew S Louka
Homology Modelling -Protein and homology modelling for beginers
B iocompanion -Tutorial for sequence analysis
Bioinformatics and Genomic Analysis -Link to graduate student course at the university of Arizona
EMBnet Biocomputing Tutorials - Introduction
Integrative Bioinformatics: Practical Kinetic Modeling of Biological Systems
Biocomputing For Everyone !
The Biocomputing Glossary
Computational Biology Course, Martin Tompa
Course Distance Learning in Bioinformatics
Functional genomics glossaries
How to become a bioinformatics expert
Internet for biologists
Jose R. Valverde's 'dirty' training course documents
Algorithms in Molecular Biology (University of Washington)
Protein Sequence Analysis in the Genomic Era
Protein sequence and structure analysis: A practical guide.
Topics of Evolutionary Computation
VSNS BioComputing Division
Bioinformatics -Primer on biosequence comparisons
Algorithms in Molecular Biolgy -Excellent for learning bascis about many bioinfo tools
Biocomputing -Biocomputing tutorial at EBI
Bioinforamtics Training Resources -Links to an excellent selection of bioinformatics tools training at NYU
DNA composition and Exon prediction -Sequence based measures indicative of protein-coding function in genomic DNA
BCD BioComputing Tutorial

Documentation on Major Sequence Databases
EMBL Nucleic Acid Sequence Database Documentation
SwissProt Protein Sequence Database Documentation
GenBank Nucleic Acid Sequence Database Documentation
Sequence Database Feature Table
CORBA Servers and Services at EBI (Oib99)

Guide to the GCG Package
AGRENET's Unofficial Guide to GCG Software
W2H web interface to the GCG package (help pages)
PDF files for the GCG Wisconsin Package
Wisconsin Package User's guide

Guides to Multiple Alignment
A Gentle Guide to Multiple Alignment
ClustalW documentation
BioComputing Hypertext Coursebook
VSNS BioComputing Division Multiple Alignment,Resource Page

Guides to Phylogenetics
Phylogenetic Analysis of Sequences (MCB416/516)
Glossary of terms used in Phylogeny Reconstruction.
PHYLIP Guide (EMBNet)
PHYLIP Phylogeny Inference Package documentation
PAUP tutorial

Guides on Similarity Searching
An Overview of Sequence Comparison Algorithms in Molecular
Bill Pearson talks about Protein Evolution
Biological Sequences and Information
BLAST HELP MANUAL
BLAST tutorial
Pedestrian guide to analysing sequence databases
Sequence Comparison (Keith Robison)
Database Research at Penn
Biology, E. W. Myers
Bill Pearson talks about Fasta
Bioinformatics: Elementary Sequence Analysis, Brian Golding and Dick Morton
Distant homologies: motifs, patterns, profiles
A Guide to Molecular Sequence Analysis
Exploring Distant Protein Sequence Relationships
Sequence Analysis tutorial
The Sequence and Structure Searching Site
Flexible Information Visualization of Multivariate Data from Biological
Sequence Similarity Searches

Computing Guides & Documentations for Other Programs
Alan Robinson's CORBA Page
Clustalw Algorithm
Ferritin Molecular-Graphics Tutorial
Genome Data Base (GDB) and Online Mendelian Inheritance in Man (OMIM)
Introduction to XML (eXtropia)
XML Workshop at EBI
The MathMol Hypermedia Textbook
Molecular dynamics simulations and CHARMM
Quantitative Genetics Resources
SRS TIPS
Staden Documentation Web Site
Networking, Phylogenetics, Protein Folding etc.
bioWidget Consortium
Computational Genefinding
GAMS: Guide to Available Mathematical Software
Introduction to Perl 5 for Web Developers (eXtropia)
Linkage analysis information - bionet . Gene-linkage FAQ
RasMol tutorial
Review of DNA transcription element searches
VSNS BioComputing Hypertext Coursebook - Alignment,
VSNS BioComputing Division Homepage

Virtual Online Tutorials
Virtual Institute of Bioinformatics National University of Ireland , Ireland
UNIX, GCG, SEQLAB and STADEN Tutorials Oxford Univ , UK
BIOTOOLS96 (Univ of) Nottingham , UK, Virtual school of molecular sciences
the principles of protein structure, using the internet Birkback College (Univ of London) , UK
Free online bioinformatics courses! s-star.org
> Science and technology directory
Weizmann Institute of Science Genome and Bioinformatics
Algorithms for Molecular Biology - Bioinformatics course notes, Tel Aviv University (TAU, Israel)
Certificate Program in Bioinformatics - Standford
Courses Offered by BU Bioinformatics Program
ISCB Training information
Penn Database Research Group- Classes
VSNS Biocomputing Division
Yale Bioinformatics -- Courses and Lectures
Bioinformtics Online lecture ( I )
Bioinformtics Online lecture ( II )
MRes Biomolecular Sciences Lecture Notes: 1. The Gene and Bioinformatics
MRes Biomolecular Sciences Lecture Notes: 2. The Gene and Bioinformatics
biocomputing, on internet (Univ of) Bielefeld , Germany Virtual School of Natural Sciences
Sequence comparison Universite de) Rouen , France
A Guide to Molecular Sequence Analysis National Hospital Univ of Oslo , Norway
Distant homologies: motifs, patterns, profiles International Centre for Genetic Engineering and Biotechnology , Trieste, Italy
Virtual School of Natural Sciences BioComputing Division - Virtual biocomputing course
Algorithms for Computational Biology (Advanced Topics #6, 236606) - Israel Institute of Technology
CSE 590BI - Computational Biology, University of Washington
MBB 447b3 (747b3) Classes - Yale
UCSC School of Engineering- Class Home Pages - University of California at Santa Cruz
Virtual Bioinformatics Distance Learning - Bioinformatics and Functional genomics courses offered by IMC Bioinformatics, University of Tampere
Tutorials using NCBI Bioinformtics Tools
Bioinformatics Articles
What is bioinformatics??? -A brief description about this emerging field
What is Bioinformatics - An introduction article by Mark Gerstein at Yale University.
The powerful world of bioinformatics
Bioinformatics: Key to 21st Century Biology
FAQs - Frequently asked questions on bioinformatics related topics Now you know what it is, find out what it takes to become a bioinformatician . Bioinformatics career questions answered.
The commercialization of bioinformatics by Phillip B.C. Jones
A Curriculum for Bioinformatics: The Time is Ripe This article proproses requirements for a standard bioinformatics curriculum. By Russ Altman.
Human Genome Research A description of the Human Genome Project.
Retooling for Bioinformatics An article from The Scientist
A Programming Course in Bioinformatics A discussion of the task of teaching an introductory bioinformatics course. By Russ Altman and John Koza.
Sequence analysis Keith Robison's guide to the exciting world of biosequence comparison! Useful background information on a variety of computational biology algorithms.
Bioinformatics, Supercomputing, and Complex Genome Analysis , DOE/NIH Human Genome News , 4(5) January 1993.
Medical Informatics Training at Stanford University School of Medicine An article from 1995 by Edward Shortliffe describing our medical informatics training program, the nature of the curriculum, the backgrounds of our students, and the career paths of our graduates.
Bioinformatics review articles published 1993-1996. A collection of off-line references to review papers, compiled by The Irish National Centre for BioInformatics. A great starting point for anyone wanting a general introduction to the field.
Elementary Sequence Analysis - Database Searching by B. Golding Jan 1996. Fasta, blast, blitz, blaze, flash, blocks.
Bioinformatics in Support of Molecular Medicine A description of bioinformatics and its connection to clinical informatics. By Russ Altman.
Biology as a Business Venture and the Rise of Bioinformatics , 1996.
Preface to Molecular Bioinformatics- Sequence Analysis , 1997.
Bioinformatics & Cheminformatics in the Drug Discovery Cycle , 1997.
Bioinformatics in a post-genomics age Sept 1997
Bioinformatics takes charge , Trends in Biotech. , Vol. 16 No. 3 (170) , pp. 104-107, March 1998.
"A Curriculum For Bioinformatics: The Time Is Ripe" An editorial from the journal BIOINFORMATICS-Bioinformatics, Vol 14, Issue 7, pages 549-550 (August 1998)
Bioinformatics, pharma and farmers , Trends in Biotech. , Vol. 17 No. 3 (182) , pp. 85-88. March 1999.
Bioinformatics/Computational Biology Programs (May 1999)
Biocomputing For Everone an introduction to biocomputing for the layperson published by the VSNS biocomputing division.
Biocomputing For Schools Another VSNS publication - this time aimed at highschool students, but fun to read for everyone. Includes articles on the application of bioinformatics to BSE research, and a ``Do-It-Yourself'' detailed example of a WWW search.
Understanding the human genome By D. L. Brutlag, in Scientific American: Introduction to Molecular Medicine , P. In Leder, D. A. Clayton, E. Rubenstein, Eds., (New York: Scientific American , 1994), pp. 153-168.
Viva bioinformatics, but who survives? , 1999.
Bioinformatics: Playing The Numbers Game June 1999
Mining the Genome Sept 1999
Commercialization of biological information and the rise of bioinformatics - Part I , Nov/Dec 1999, 20/21, pp. 40-47.
Commercialization of biological information and the rise of bioinformatics - Part II , Jan 2000, pp. 51-56.
Turbo-charging bioinformation for drug discovery , Feb 2000, pp. 38-49.
Bioinformatics: low supply, high demand June 2000
The Next Wave of the Genomics Business July 2000
The Bioinformatics Gold Rush July 2000
Bioinformatics . Next Wave feature on careers in bioinformatics. September 2000
A prerequisite for working in thie field: love of computers article from The Scientist (Nov 2000)
Sep/Oct 2000 issue of the MIT Technology Review
How to become a bioinformatics expert , including a listing of European opportunities to study bioinformatics. Compiled by theVirtual School of Natural Sciences BioComputing Division.
Protein Sequence Alignment and Database Scanning Geoff Barton's review.
Pattern matching and motifs
Knowledge-based Analysis of Microarray Gene Expression Data Using Support Vector Machines
VHG Virtural HyperGlossary. Defines terms used in different subfields, currently Glycoscience, Protein Structure.
LASSAP a LArge Scale Sequence compArison Package
Bioinformatics in pre- and post-genomics eras , Trends in Biotech. , Vol. 18 , pp. 133-135, April 2000.
Confluence of Western and Traditional Medicines and Future Prospectes - Part I , Mar/Apr 2000, pp. 34-37.
Confluence of Western and Traditional Medicines and Future Prospectes - Part II , May/Jun 2000, pp. 66-74.
Computers + Biology = Bioinformatics April 2001
Bioinformatics U., Genome Technology, September, 2001 An article from Genome Technology written by Nat Goodman about bioinformatics curricula.
Training in a Hybrid Discipline, Nature, October 25, 2001 An article from Nature written by Potter Wickare and Paul Smaglik on bioinformatics training programmes in North America.
Bioinformatics Knowledge Vital to Careers - Competition from mathematicians and computer scientists compels biologists to become computational article from The Scientist (Sept 2002)
The babel of bioinformatics By Teresa Attwood, Science , 5491: 471 (2000).
The quiet revolution: Biodiversity informatics and the internet By Frank A. Bisby, Science , 289: 2309 (2000).
Are you ready for the revolution? By Declan Butler, Nature , 409: 758-760 (2001).
Beyond the genome: Biotech's next holy grail By Ellen Licking, Business Week , April 10, 2000.
The genome explained By Ellen Licking, Business Week , June 12, 2000.
Why bioinformatics is hot career By Stacey Wells, San Francisco Chronicle , March 4, 2001.
Proteomics: Beyond the genome Edited by Patricia O'Connell, Business Week Online, June 7, 2001.
A true believer dismisses indifference to bioinformatics By Terence Chea, Washington Post , March 14, 2002.
Genome map on a grain of rice By Kristen Philipkoski, Wired News , March 29, 2002.
Informatics moves to the head of the class By Beth Schachter, Bio-IT World , June 12, 2002.
The proteomics odyssey By Malorye Branca, Bio-IT World , Aug. 13, 2002.
Dell goes nuts for clusters By Michael Kanellos, CNET News.com , Sept. 2, 2002.
IBM teams with TurboGenomics By Salvatore Salamone, Bio-IT World , Sept. 5, 2002.
The new, new pharmacogenomics By Malorye Branca, Bio-IT World , Sept. 9, 2002.
RLX introduces a biocluster in a box By Salvatore Salamone, Bio-IT World , Sept. 17, 2002.
CombinatorX gets $40 million to look for drug synergies By Salvatore Salamone, Bio-IT World , Sept. 24, 2002.
Calculating with DNA By Salvatore Salamone, Bio-IT World , October 2002.
Hitachi Soft develops low-cost human genome DNA chip By Kuriko Miyake, ITworld.com , Oct. 8, 2002.
IBM chooses Linux for 'Blue Gene' supercomputer By Lisa Gill, NewsFactor Network , Oct. 24, 2002.
The international 'HapMap' project cbsnews.com , Oct. 29, 2002.
US stem cell policy deters investors By Steve Mitchell, UPI , Nov. 2, 2002.
Biochip sprouts DNA strands By Kimberly Patch, Technology Research News , Nov. 13, 2002
Genetic code of mouse published By Justin Gillis, Washington Post , Dec. 5, 2002
Genomics consolidation — no pain, no gain By Malorye Branca, Bio-IT World , Dec. 10, 2002.
Data stored in multiplying bacteria By Natasha McDowell, NewScientist.com , Jan. 3, 2003.
Cowabunga! Scientists to start Bovine Genome Project Science Daily , March 5, 2003.
Computational Analysis of Complexity in Gene Expression Arrays
Building your own Bioinformatics Supercomputer for Cheap Using Grid Technology
Career Advice for Computational Biology By Amjad-Ali Khoja at U. Texas.
Proceedings of the National Academy of Sciences
A Practical Guide to protein sequence and